Motif, Pattern recognition

Links for my personal use

Up Scientific programming

• Limitations and potentials of current motif discovery algorithms. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1199555
• A profile-based deterministic sequential Monte Carlo algorithm for motif discovery. http://bioinformatics.oxfordjournals.org/cgi/content/full/24/1/46
• PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences. http://www.biomedcentral.com/1471-2105/5/170
• An efficient motif discovery algorithm with unknown motif length and number of binding sites. http://i.cs.hku.hk/~chin/paper/IJDMB06.pdf
• A Hybrid Algorithm For Motif Discovery From Dna Sequences. http://www.cbrc.jp/~ewijaya/papers_pdf/HMD-APBC05.pdf
• Detecting Subdimensional Motifs: An Efficient Algorithm for Generalized Multivariate Pattern Discovery. http://www.cc.gatech.edu/~dminn/papers/minnen-icdm2007.pdf
• Motif finding in biological sequences. http://bioinformatics.holstegelab.nl/twiki/pub/Courses/Introbioinformatics/ProgrammeDay3/Profiles_and_sequence_logos.ppt
• Konstantinos Blekas ∗, Dimitrios I. Fotiadis and Aristidis Likas. Greedy mixture learning for multiple motif discovery in biological sequences
• Analysis of computational approaches for motif discovery. http://www.almob.org/content/1/1/8
• Regulatory Motif Finding by Logic Regression. http://www.bepress.com/cgi/viewcontent.cgi?article=1145&context=ucbbiostat

• Discovering Multivariate Motifs using Subsequence Density ... http://www.cc.gatech.edu/~dminn/presentations/minnen-aaai2007.ppt
• Motif discovery in sequential data. http://dspace.mit.edu/handle/1721.1/36914
• KOALAB: A new method for regulatory motif search. Illustration on alternative splicing regulation in HIV-1.
• http://www.springerlink.com/content/63024317241700k8/
• http://bioinformatics.oxfordjournals.org/cgi/content/full/21/11/2636

• Constructive Neural Network Learning Algorithms for Multi-Category Real-Valued Pattern Classification.
• Streaming Pattern Discovery in Multiple Time-Series. http://www.vldb2005.org/program/paper/thu/p697-papadimitriou.pdf
• Pattern Recognition In Time-Series. http://www.haikulabs.com/pattrec.htm
• http://www.springerlink.com/content/6epe2rc1hpp70241/
• Pattern Discovery from Stock Time Series Using Self-Organizing Maps. http://www.sigkdd.org/kdd2001/Workshops/fcl.pdf
• Pattern Finding and Pattern Discovery in Time Series. http://www.cc.gatech.edu/grads/t/tqlong/index/cs7001.ppt
• http://www.fujipress.jp/finder/xslt.php?mode=present&inputfile=JACII001000030017.xml
• Visualizing and Discovering Non-Trivial Patterns In Large Time Series Databases. http://www.cs.ucr.edu/~eamonn/SIGKDD_2004_vistree.pdf
• Interactive Exploration of Coherent Patterns in Time-series Gene Expression Data. http://www.cs.sfu.ca/~jpei/publications/coherentpattern_kdd03.pdf
• Deformable Markov Model Templates for Time-Series Pattern Matching. http://www.datalab.uci.edu/papers/trseghmm.pdf
• http://www.springerlink.com/content/e5xl0hjtr26u3b5u/
• Mining Abnormal Patterns from Heterogeneous Time-Series with Irrelevant Features for Fault Event Detection.
• A New Time-Series Chart Pattern Recognition Approach. http://istg.tamu-commerce.edu/Suh-Papers/IDPT2005.pdf
• Mining Hierarchical Temporal Patterns in Multivariate Time Series. http://www.mybytes.de/papers/moerchen04mining.pdf
• http://www.citebase.org/abstract?id=oai:arXiv.org:cs/0210025
• http://www.waset.org/ijci/v4/v4-2-19.pdf
• SpADe: On Shape-based Pattern Detection in Streaming Time Series. http://www.cs.ualberta.ca/~mn/Papers/icde2007.pdf
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